approved
Gene-specific regularization for COPD partial-correlation estimation

We introduce a gene-specific regularization factor when computing the Partial Correlation score to make the indeterminate regression feasible. We decided to slightly modify the computation of the sparse partial correlation matrix. Controlling for other genes’ expression we take into consideration additional biological sources, such as the PPI or co-occurrence in biological pathways, to prioritize which genes would have a greater weight, i.e., using a specific λ_(i,k) when computing partial correlations for gene i (gi) and controlling for gene k (gk). The higher the score in λ_(i,k) (for instance genes far away in the PPI) the less gk will be considered to regress gi expression.

Tags
Data and Resources
To access the resources you must log in

This item has no data

Additional Info
Field Value
Accessibility Both
AccessibilityMode Download
Availability On-Line
Basic rights Temporary download of a single copy only
CreationDate 2022-11-11
Creator Gentili, Michele, gentili@diag.uniroma1.it
Field/Scope of use Non-commercial research only
Group Health Studies
Owner Gentili, Michele, gentili@diag.uniroma1.it
SoBigData Node SoBigData EU
Sublicense rights No
Territory of use World Wide
Thematic Cluster Other
system:type Method
Management Info
Field Value
Author Anagnostopoulos Aris
Maintainer Anagnostopoulos Aris
Version 1
Last Updated 27 October 2023, 01:19 (CEST)
Created 24 November 2022, 05:57 (CET)