130 items found

Formats: Shared Definition Tags: Sampling and laboratory testing

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  • GlossaryTerm

    Subtype

    Discrimination of bacteria below the level of species.
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  • GlossaryTerm

    Reference Strain

    A well-defined strain that is used as the example strain for a specific method.
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  • GlossaryTerm

    Qualitative Method

    A qualitative method is a method of analysis whose response is either the presence or absence of the analyte in a certain amount of sample.
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  • GlossaryTerm

    Risk- Based Sampling

    Designing a sampling strategy to reduce the cost or enhance the accuracy of surveillance by preferentially sampling strata (e.g. age groups or geographical areas) within the...
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  • GlossaryTerm

    Zoonotic Agent

    Any virus, bacteria, fungus, parasite or other biological entity that is likely to cause a zoonosis
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  • GlossaryTerm

    Discriminatory Ability

    The ability of a method to discriminate/make a distinction between isolates
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  • GlossaryTerm

    Data Pseudomysation

    The processing of personal data in such a way that the data can no longer be attributed to a specific data subject without the use of additional information, as long as such...
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  • GlossaryTerm

    Sanger Sequencing

    Method used to determine a portion of the nucleotide sequence of an organisms genome. This technique is based on the selective incorporation of chain-terminating...
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  • GlossaryTerm

    Whole Genome Sequencing (WGS)

    Determination of the complete DNA sequence of an organism
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  • GlossaryTerm

    Sequence fragment

    A short string of text that represents a portion of a DNA (or RNA) sequence. NGS machines produce short reads that are sequence fragments that are read from DNA fragments.
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  • GlossaryTerm

    Typing Method

    Biological method used to define/characterise an isolate
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  • GlossaryTerm

    Sequence variants

    Differences at specific positions between two aligned sequences. Variants include single-nucleotide polymorphisms (SNPs), insertions and deletions, copy number variants, and...
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  • GlossaryTerm

    Reference Method

    A reference method is a method which is internationally recognised and accepted, e.g. NMKL, ISO, CEN and AOAC International methods or methods given in EU/national legislations...
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  • GlossaryTerm

    Epidemiological Breakpoint

    Are measures of a drugs minimum inhibitory concentration distribution that separate bacterial populations into those representative of a wild type population, and those with...
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  • GlossaryTerm

    Core Genome

    Those parts of the genome shared by all members of a defined subset of bacteria.
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  • GlossaryTerm

    Molecular Serotype

    The use of one or several molecular methods to derive the serotype (examples PCR and/or sequencing)
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  • GlossaryTerm

    Type

    Type specimen, type species or type genus.
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  • GlossaryTerm

    Contig

    A contiguous stretch of DNA sequence that is the result of assembly of multiple overlapping sequence reads into a single consensus sequence. A contig requires a complete tiling...
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  • GlossaryTerm

    Sequence read

    When DNA sequence is obtained by any experimental method, including both Sanger and next-generation methods, the data are obtained from individual template molecules as a string...
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  • GlossaryTerm

    Next Generation Sequencing (NGS)

    DNA sequencing technologies that simultaneously determine the sequence of DNA bases from many thousands (or millions) of DNA templates in a single biochemical reaction volume....
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