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Phenotype
Total characteristics displayed by an organism under a particular set of environmental factors, regardless of the actual genotype of the organism.-
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Population Demographic
Data on animals or people at a particular place by administrative or geographycal units-
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Analyte
The analyte is the component demonstrated or measured by the method of analysis. It may be the microorganism, its components or products.-
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Sample Size
The number of sampling units which are to be included in the sample. In the case of a multi-stage sample this number refers to the number of units at the final stage in the...-
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Sequence alignment
An algorithmic approach to find the best matching of consecutive letters in one sequence (text symbols that represent the polymer subunits of DNA or protein sequences) with...-
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Whole Genome MLST(WGMLST)
Consist of a fixed set of species specific genes, also including variable and transfeerable loci.-
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Subspecies
In bacterial taxonomy subgroups of a species that differ in their phenotypic or genotypic characteristics.-
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In Silico Serotype
The use of one or several molecular methods to derive the serotype (examples PCR and/or sequencing)-
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Antibiotic
A substance produced by or derived from a microorganism, which destroys or inhibits the growth of other microorganisms.-
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Variant detection
NGS is frequently used to identify mutations in DNA samples from individual patients or experimental organisms. Sequencing can be done at the whole-genome scale; RNA-seq, which...-
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Core Genome MLST (CGMLST)
Strain differentiation by determining the number different alleles in a predefined set of loci that represents core genes.-
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Food Handler
Any person who directly handles packaged or unpackaged food, food equipment and utensils, or food contact surfaces and is therefore expected to comply with food hygiene...-
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Consensus Sequence
When two or more DNA sequences are aligned, the overlapping portions can be combined to create a single consensus sequence. In positions where all overlapping sequences have the...-
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