130 items found

Formats: Shared Definition Tags: Sampling and laboratory testing

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  • GlossaryTerm

    Phenotype

    Total characteristics displayed by an organism under a particular set of environmental factors, regardless of the actual genotype of the organism.
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  • GlossaryTerm

    Population Demographic

    Data on animals or people at a particular place by administrative or geographycal units
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  • GlossaryTerm

    Sample

    Small part or quantity intended to show what the whole is like.
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  • GlossaryTerm

    Sampling Frame

    Complete list of all units of the population, which can be sampled
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  • GlossaryTerm

    Sampling Event

    The sampling unit or units extracted at certain time from the sampled population
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  • GlossaryTerm

    Analyte

    The analyte is the component demonstrated or measured by the method of analysis. It may be the microorganism, its components or products.
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  • GlossaryTerm

    Accuracy

    Closeness of estimates to the unknown true values
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  • GlossaryTerm

    Sample Size

    The number of sampling units which are to be included in the sample. In the case of a multi-stage sample this number refers to the number of units at the final stage in the...
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  • GlossaryTerm

    Sequence alignment

    An algorithmic approach to find the best matching of consecutive letters in one sequence (text symbols that represent the polymer subunits of DNA or protein sequences) with...
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  • GlossaryTerm

    Sequence Data

    The raw reads produced from basecalling, usually saved in FASTQ format for NGS data.
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  • GlossaryTerm

    Whole Genome MLST(WGMLST)

    Consist of a fixed set of species specific genes, also including variable and transfeerable loci.
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  • GlossaryTerm

    Subspecies

    In bacterial taxonomy subgroups of a species that differ in their phenotypic or genotypic characteristics.
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  • GlossaryTerm

    In Silico Serotype

    The use of one or several molecular methods to derive the serotype (examples PCR and/or sequencing)
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  • GlossaryTerm

    Population

    a population is a group of people with a common characteristic.
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  • GlossaryTerm

    Antibiotic

    A substance produced by or derived from a microorganism, which destroys or inhibits the growth of other microorganisms.
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  • GlossaryTerm

    Variant detection

    NGS is frequently used to identify mutations in DNA samples from individual patients or experimental organisms. Sequencing can be done at the whole-genome scale; RNA-seq, which...
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  • GlossaryTerm

    Core Genome MLST (CGMLST)

    Strain differentiation by determining the number different alleles in a predefined set of loci that represents core genes.
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  • GlossaryTerm

    Food Handler

    Any person who directly handles packaged or unpackaged food, food equipment and utensils, or food contact surfaces and is therefore expected to comply with food hygiene...
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  • GlossaryTerm

    Consensus Sequence

    When two or more DNA sequences are aligned, the overlapping portions can be combined to create a single consensus sequence. In positions where all overlapping sequences have the...
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  • GlossaryTerm

    Sample Size

    The number of units randomly chosen from the sampling frame.
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